Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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cis_splice_site

SO:0001419

Definition: Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron.

Comments and references

Definition references: SO:cjm, SO:ke

Synonyms

ScopeValue
exactcis splice site

Identifiers and subsets

Accession: SO:0001419

Persistent URL: http://purl.obolibrary.org/obo/SO_0001419

Alternate IDs: None

Subsets: SOFA

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0001419 Ontology neighborhood graph for SO:0001419 cis_splice_site. Parent, child, and related nodes can be activated to open their term pages. SO:0000162 splice_site SO:0000162 splice_site SO:0001419 cis_splice_site SO:0001419 cis_splice_site SO:0001993 extended_cis_splice_site SO:0001993 extended_cis_splice_site SO:0000164 three_prime_cis_splice_site SO:0000164 three_prime_cis_splice_site SO:0000163 five_prime_cis_splice_site SO:0000163 five_prime_cis_splice_site SO:0000998 recursive_splice_site SO:0000998 recursive_splice_site
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: cis_splice_site
Initial definition captured.
Initial parent: SO:0000162
92e3cae