Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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splice_site

SO:0000162

Definition: Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction.

Comments and references

With spliceosomal introns, the splice sites bind the spliceosomal machinery.

Definition references: SO:cjm, SO:ke

Synonyms

ScopeValue
exactsplice site

Identifiers and subsets

Accession: SO:0000162

Persistent URL: http://purl.obolibrary.org/obo/SO_0000162

Alternate IDs: None

Subsets: SOFA

Cross references: http://en.wikipedia.org/wiki/Splice_site

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0000162 Ontology neighborhood graph for SO:0000162 splice_site. Parent, child, and related nodes can be activated to open their term pages. SO:0000835 primary_transcript_region SO:0000835 primary_transcript_region SO:0000162 splice_site SO:0000162 splice_site SO:0001420 trans_splice_site SO:0001420 trans_splice_site SO:0001533 cryptic_splice_site SO:0001533 cryptic_splice_site SO:0001419 cis_splice_site SO:0001419 cis_splice_site
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: splice_site
Initial definition captured.
Initial parent: SO:0000835
92e3cae