Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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LTR_component

SO:0000848

Definition: The long terminal repeat found at the ends of the sequence to be inserted into the host genome.

Synonyms

ScopeValue
exactLTR component
exactlong term repeat component

Identifiers and subsets

Accession: SO:0000848

Persistent URL: http://purl.obolibrary.org/obo/SO_0000848

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2020-03-27 in commit 3ec5d33

Number of changes: 2

Ontology neighborhood diagram

Ontology neighborhood for SO:0000848 Ontology neighborhood graph for SO:0000848 LTR_component. Parent, child, and related nodes can be activated to open their term pages. SO:0000840 repeat_component SO:0000840 repeat_component SO:0000848 LTR_component SO:0000848 LTR_component SO:0000850 five_prime_LTR_component SO:0000850 five_prime_LTR_component SO:0000422 U5_LTR_region SO:0000422 U5_LTR_region SO:0000423 R_LTR_region SO:0000423 R_LTR_region SO:0000424 U3_LTR_region SO:0000424 U3_LTR_region SO:0000849 three_prime_LTR_component SO:0000849 three_prime_LTR_component SO:0000286 long_terminal_repeat SO:0000286 long_terminal_repeat
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

http://purl.obolibrary.org/obo/so#part_of (outgoing)

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2020-03-27definition changedDefinition updated
Before: no definition recorded
After: The long terminal repeat found at the ends of the sequence to be inserted into the host genome.
3ec5d33
2016-12-05createdTerm introduced into the editable ontology history
Initial label: LTR_component
Initial parent: SO:0000840
92e3cae