Sequence Ontology

A shared vocabulary for biological sequence features and annotations

Home / Current release / SO:0000194

LINE_element

SO:0000194

Definition: A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats.

Comments and references

Definition references: http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html

Synonyms

ScopeValue
exactLINE
exactLINE element
exactLong interspersed element
exactLong interspersed nuclear element

Identifiers and subsets

Accession: SO:0000194

Persistent URL: http://purl.obolibrary.org/obo/SO_0000194

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0000194 Ontology neighborhood graph for SO:0000194 LINE_element. Parent, child, and related nodes can be activated to open their term pages. SO:0000189 non_LTR_retrotransposon SO:0000189 non_LTR_retrotransposon SO:0000194 LINE_element SO:0000194 LINE_element SO:0002272 L1_LINE_retrotransposon SO:0002272 L1_LINE_retrotransposon SO:0002273 I_LINE_retrotransposon SO:0002273 I_LINE_retrotransposon SO:0002270 RTE_LINE_retrotransposon SO:0002270 RTE_LINE_retrotransposon SO:0002271 Jockey_LINE_retrotransposon SO:0002271 Jockey_LINE_retrotransposon SO:0002269 R2_LINE_retrotransposon SO:0002269 R2_LINE_retrotransposon
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: LINE_element
Initial definition captured.
Initial parent: SO:0000189
92e3cae