SO:0002304 - topologically_associated

topologically_associated_domain

SO:0002304

Definition: An instance of a self-interacting DNA region flanked by left and right TAD boundaries.

Comments and references

Added by Dave to be consistent with other ontologies updated with GREEKC initiative.

Definition references: GREEKC:cl, PMID:32782014

Synonyms

Scope	Value
exact	TAD
exact	topologically associated domain

Identifiers and subsets

Accession: SO:0002304

Persistent URL: http://purl.obolibrary.org/obo/SO_0002304

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2020-08-13 in commit 56fcc6a

Most recent Git-era change: 2020-08-13 in commit 56fcc6a

Number of changes: 1

Ontology neighborhood diagram

The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

SO:0001412 - topologically_defined_region

Children

None recorded in the current release neighborhood.

http://purl.obolibrary.org/obo/so#overlaps (incoming)

SO:0002307 - DNA_loop

http://purl.obolibrary.org/obo/so#part_of (incoming)

SO:0002305 - topologically_associated_domain_boundary

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

Date	Change	Summary	Evidence
2020-08-13	created	Term introduced into the editable ontology history Initial label: topologically_associated_domain Initial definition captured. Initial parent: SO:0001412	`56fcc6a`