sense_overlap_lncRNA
SO:0002132
Definition: A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence.
Comments and references
Updating the names of sense_intronic_ncRNA (SO:0002131), sense_overlap_ncRNA (SO:0002132), sense_overlap_ncRNA_gene (SO:0002183), and sense_intronic_ncRNA_gene (SO:0002184) to _lncRNA. See GitHub Issue #579.
Definition references: GENECODE:http://www.gencodegenes.org/gencode_biotypes.html
Synonyms
| Scope | Value |
|---|---|
| exact | sense overlap lncRNA |
| exact | sense_overlap_lncRNA |
| exact | sense_overlapping |
Identifiers and subsets
Accession: SO:0002132
Persistent URL: http://purl.obolibrary.org/obo/SO_0002132
Alternate IDs: None
Subsets: None
Cross references: None
History summary
Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.
First seen in Git-era editable history: 2016-12-05 in commit 92e3cae
Most recent Git-era change: 2022-10-28 in commit 0ebbac6
Number of changes: 8
Ontology neighborhood diagram
Relationships
Parents
Children
None recorded in the current release neighborhood.
Change history
This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.
| Date | Change | Summary | Evidence |
|---|---|---|---|
| 2022-10-28 | label changed | Label changed from sense_overlap_ncRNA to sense_overlap_lncRNA Before: sense_overlap_ncRNA After: sense_overlap_lncRNA | 0ebbac6#579 |
| 2021-04-23 | edited | Term stanza touched in repository history | 296ecdb#503 |
| 2017-10-10 | synonym added | Synonym added: sense_overlap_lncRNA Scope: exact | 49ece8a |
| 2017-10-10 | synonym added | Synonym added: sense overlap lncRNA Scope: exact | 49ece8a |
| 2017-10-03 | parent removed | Parent removed: SO:0000655 | 84cde51 |
| 2017-10-03 | parent added | Parent added: SO:0001877 | 84cde51 |
| 2017-10-03 | definition changed | Definition updated Before: A non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence. After: A long non-coding transcript that contains a protein coding gene within its intronic sequence on the same strand, with no overlap of exonic sequence. | 84cde51 |
| 2016-12-05 | created | Term introduced into the editable ontology history Initial label: sense_overlap_ncRNA Initial definition captured. Initial parent: SO:0000655 | 92e3cae |