SO:0002115 - pseudogenic_transcript_with_retained

pseudogenic_transcript_with_retained_intron

SO:0002115

Definition: A transcript supported by EST and/or mRNA evidence that aligns unambiguously to the pseudogene locus; has retained intronic sequence compared to a reference transcript sequence.

Comments and references

These terms have been requested by Adam Frankish to support Gencode and Vega biotypes.

Definition references: GENCODE:http://www.gencodegenes.org/gencode_biotypes.html

Synonyms

Scope	Value
exact	pseudogene retained intron

Identifiers and subsets

Accession: SO:0002115

Persistent URL: http://purl.obolibrary.org/obo/SO_0002115

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

SO:0000185 - primary_transcript

Children

None recorded in the current release neighborhood.

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

Date	Change	Summary	Evidence
2016-12-05	created	Term introduced into the editable ontology history Initial label: pseudogenic_transcript_with_retained_intron Initial definition captured. Initial parent: SO:0000185	`92e3cae`