Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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inframe_insertion

SO:0001821

Definition: An inframe non synonymous variant that inserts bases into in the coding sequence.

Comments and references

Definition references: EBI:gr

Synonyms

ScopeValue
exactANNOVAR:nonframeshift insertion
exactJannovar:inframe_insertion
exactVAT:insertionNFS
exactVEP:inframe_insertion
exactinframe increase in CDS length
exactinframe insertion
exactinframe_codon_gain
exactsnpEFF:CODON_INSERTION
relatedinframe codon gain

Identifiers and subsets

Accession: SO:0001821

Persistent URL: http://purl.obolibrary.org/obo/SO_0001821

Alternate IDs: SO:0001651

Subsets: None

Cross references: http://snpeff.sourceforge.net/SnpEff_manual.html, http://vat.gersteinlab.org/formats.php, http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0001821 Ontology neighborhood graph for SO:0001821 inframe_insertion. Parent, child, and related nodes can be activated to open their term pages. SO:0001908 internal_feature_elongation SO:0001908 internal_feature_elongation SO:0001820 inframe_indel SO:0001820 inframe_indel SO:0001821 inframe_insertion SO:0001821 inframe_insertion SO:0001824 disruptive_inframe_insertion SO:0001824 disruptive_inframe_insertion SO:0001823 conservative_inframe_insertion SO:0001823 conservative_inframe_insertion
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: inframe_insertion
Initial definition captured.
Initial parents: SO:0001820, SO:0001908
92e3cae