Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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structural_variant

SO:0001537

Definition: A sequence variant that changes one or more structural features.

Comments and references

Definition references: SO:ke

Synonyms

ScopeValue
exactJannovar:structural_variant
exactVAT:svOverlap
relatedstructural variant

Identifiers and subsets

Accession: SO:0001537

Persistent URL: http://purl.obolibrary.org/obo/SO_0001537

Alternate IDs: None

Subsets: None

Cross references: http://vat.gersteinlab.org/formats.php

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2021-10-28 in commit 296b138

Number of changes: 2

Ontology neighborhood diagram

Ontology neighborhood for SO:0001537 Ontology neighborhood graph for SO:0001537 structural_variant. Parent, child, and related nodes can be activated to open their term pages. SO:0001060 sequence_variant SO:0001060 sequence_variant SO:0001537 structural_variant SO:0001537 structural_variant SO:0001880 feature_amplification SO:0001880 feature_amplification SO:0001881 feature_translocation SO:0001881 feature_translocation SO:0001882 feature_fusion SO:0001882 feature_fusion SO:0002160 sequence_length_variant SO:0002160 sequence_length_variant SO:0001879 feature_ablation SO:0001879 feature_ablation SO:0001878 feature_variant SO:0001878 feature_variant
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2021-10-28definition changedDefinition updated
Before: A sequence variant that changes one or more sequence features.
After: A sequence variant that changes one or more structural features.
296b138
2016-12-05createdTerm introduced into the editable ontology history
Initial label: structural_variant
Initial definition captured.
Initial parent: SO:0001060
92e3cae