| Home Page | ||
| Description of SO | ||
| Views of SO | ||
| Resources | ||
| Releases | ||
| Mailing List | ||
| Developers Pages | ||
| Request a term | ||
| Anonymous CVS download | ||
| Browse CVS directories | ||
| SO Style Guide | ||
| SO presentations | ||
| SO publications | ||
| SO meetings | ||
| Groups using SO | ||
| SO Compliant formats | ||
| GFF3 | ||
| Chado | ||
| Chaos | ||
| SO Compliant Software | ||
| SO mappings | ||
| How to... | ||
| FAQ | ||
| Acknowledgements | ||
| Related Projects | ||
| Gene Ontology Consortium | ||
| Open Biomedical Ontologies | ||
| Generic Model Organism Databases | ||
| Project Members | ||
| WormBase | ||
| BDGP | ||
| FlyBase | ||
| MGI | ||
| Sanger Institute | ||
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Maintained on SourceForge. |
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Supported by a grant from the National Human Genome Research Institute. |
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Member of the Gene Ontology Consortium. |
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Member of the Open Biomedical Ontologies. |
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Getting SO Software via Anonymous CVS
The SO CVS repository can be checked out through anonymous (pserver) CVS with the following instruction set. The module you wish to check out must be specified as the modulename. When prompted for a password for anonymous, simply press the Enter key.
cvs -d:pserver:anonymous@song.cvs.sourceforge.net:/cvsroot/song login cvs -d:pserver:anonymous@song.cvs.sourceforge.net:/cvsroot/song co modulename
Updates from within the module's directory do not need the -d parameter.
You can check out the following modules. Note that capitalization is significant!
| ontology | The concepts and and terms of the SO in a DAG text format |
|---|---|
| software | Some very preliminary Perl modules written by Mark Yandell for using the SO in the context of the Chado database schema |
| so-home | The source for the SO website |
Please note that although we do our best not to check in grossly malfunctioning software, the CVS versions of these packages are cutting edge and hence not guaranteed to be bug free. Always be careful when using these packages!
You can also browse the SO CVS repository to find particular files or to view the change history.
Developer CVS Access via SSH
Only project developers can access the CVS tree via this method. SSH1 must be installed on your client machine. Substitute modulename and developername with the proper values. Enter your site password when prompted.
export CVS_RSH=ssh cvs -z3 -d:ext:developername@song.cvs.sourceforge.net:/cvsroot/song co modulename

