Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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duplication

SO:1000035

Definition: An insertion which derives from, or is identical in sequence to, nucleotides present at a known location in the genome.

Comments and references

Definition references: EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html, NCBI:th

Synonyms

ScopeValue
exactnucleotide duplication
relatednucleotide_duplication

Identifiers and subsets

Accession: SO:1000035

Persistent URL: http://purl.obolibrary.org/obo/SO_1000035

Alternate IDs: None

Subsets: None

Cross references: loinc:LA6686-5

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:1000035 Ontology neighborhood graph for SO:1000035 duplication. Parent, child, and related nodes can be activated to open their term pages. SO:0000667 insertion SO:0000667 insertion SO:1000035 duplication SO:1000035 duplication SO:1000173 tandem_duplication SO:1000173 tandem_duplication SO:0001928 distal_duplication SO:0001928 distal_duplication SO:1000038 intrachromosomal_duplication SO:1000038 intrachromosomal_duplication SO:1000041 intrachromosomal_transposition SO:1000041 intrachromosomal_transposition
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

http://purl.obolibrary.org/obo/so#has_part (incoming)

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: duplication
Initial definition captured.
Initial parent: SO:0000667
92e3cae