start_lost
SO:0002012
Definition: A codon variant that changes at least one base of the canonical start codon.
Comments and references
Request from Uma Devi Paila, UVA. This term should not be applied to incomplete transcripts.
Definition references: SO:ke
Synonyms
| Scope | Value |
|---|---|
| exact | Jannovar:start_lost |
| exact | VEP:start_lost |
| exact | snpEff:START_LOST |
Identifiers and subsets
Accession: SO:0002012
Persistent URL: http://purl.obolibrary.org/obo/SO_0002012
Alternate IDs: None
Subsets: None
Cross references: http://snpeff.sourceforge.net/SnpEff_manual.html, http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences
History summary
Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.
First seen in Git-era editable history: 2016-12-05 in commit 92e3cae
Most recent Git-era change: 2021-07-12 in commit 795c410
Number of changes: 2
Ontology neighborhood diagram
Relationships
Parents
Children
None recorded in the current release neighborhood.
Change history
This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.
| Date | Change | Summary | Evidence |
|---|---|---|---|
| 2021-07-12 | edited | Term stanza touched in repository history | 795c410 |
| 2016-12-05 | created | Term introduced into the editable ontology history Initial label: start_lost Initial definition captured. Initial parents: SO:0001582, SO:0001992 | 92e3cae |