Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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intron_variant

SO:0001627

Definition: A transcript variant occurring within an intron.

Comments and references

EBI term: Intronic variations - In intron.

Definition references: SO:ke

Synonyms

ScopeValue
exactJannovar:intron_variant
exactSeattleseq:intron
exactVAAST:intron_variant
exactVEP:intron_variant
exactintron variant
exactintron_
exactintronic
exactsnpEff:INTRON
relatedANNOVAR:intronic
relatedSeattleseq:intron-near-splice

Identifiers and subsets

Accession: SO:0001627

Persistent URL: http://purl.obolibrary.org/obo/SO_0001627

Alternate IDs: None

Subsets: None

Cross references: http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp, http://snpeff.sourceforge.net/SnpEff_manual.html, http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0001627 Ontology neighborhood graph for SO:0001627 intron_variant. Parent, child, and related nodes can be activated to open their term pages. SO:0001576 transcript_variant SO:0001576 transcript_variant SO:0001627 intron_variant SO:0001627 intron_variant SO:0001970 non_coding_transcript_intron_variant SO:0001970 non_coding_transcript_intron_variant SO:0002018 conserved_intron_variant SO:0002018 conserved_intron_variant SO:0001969 coding_transcript_intron_variant SO:0001969 coding_transcript_intron_variant SO:0001629 splice_site_variant SO:0001629 splice_site_variant
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: intron_variant
Initial definition captured.
Initial parent: SO:0001576
92e3cae