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A shared vocabulary for biological sequence features and annotations

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3_prime_UTR_variant

SO:0001624

Definition: A UTR variant of the 3' UTR.

Comments and references

EBI term 3prime UTR variations - In 3prime UTR.

Definition references: SO:ke

Synonyms

ScopeValue
exact3'UTR variant
exact3PRIME_UTR
exactJannovar:3_prime_utr_variant
exactSeattleseq:3-prime-UTR
exactVAAST:3_prime_UTR_variant
exactVAAST:three_prime_UTR_variant
exactVEP:3_prime_UTR_variant
exactsnpEff:UTR_3_PRIME
exactthree prime UTR variant
exactuntranslated-3
relatedANNOVAR:UTR3

Identifiers and subsets

Accession: SO:0001624

Persistent URL: http://purl.obolibrary.org/obo/SO_0001624

Alternate IDs: None

Subsets: None

Cross references: http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp, http://snpeff.sourceforge.net/SnpEff_manual.html, http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0001624 Ontology neighborhood graph for SO:0001624 3_prime_UTR_variant. Parent, child, and related nodes can be activated to open their term pages. SO:0001622 UTR_variant SO:0001622 UTR_variant SO:0001624 3_prime_UTR_variant SO:0001624 3_prime_UTR_variant SO:0002090 3_prime_UTR_intron_variant SO:0002090 3_prime_UTR_intron_variant SO:0002016 3_prime_UTR_elongation SO:0002016 3_prime_UTR_elongation SO:0002015 3_prime_UTR_truncation SO:0002015 3_prime_UTR_truncation SO:0002089 3_prime_UTR_exon_variant SO:0002089 3_prime_UTR_exon_variant
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: 3_prime_UTR_variant
Initial definition captured.
Initial parent: SO:0001622
92e3cae