SO:0001575 - splice_donor

splice_donor_variant

SO:0001575

Definition: A splice variant that changes the 2 base pair region at the 5' end of an intron.

Comments and references

Definition references: SO:ke

Synonyms

Scope	Value
exact	Jannovar:splice_donor_variant
exact	Seattleseq:splice-donor
exact	VAAST:splice_donor_variant
exact	VEP:splice_donor_variant
exact	snpEff:SPLICE_SITE_DONOR
exact	splice donor variant

Identifiers and subsets

Accession: SO:0001575

Persistent URL: http://purl.obolibrary.org/obo/SO_0001575

Alternate IDs: None

Subsets: None

Cross references: http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp, http://snpeff.sourceforge.net/SnpEff_manual.html, http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

SO:0001629 - splice_site_variant

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

Date	Change	Summary	Evidence
2016-12-05	created	Term introduced into the editable ontology history Initial label: splice_donor_variant Initial definition captured. Initial parent: SO:0001629	`92e3cae`