TSS

SO:0000315

Definition: The first base where RNA polymerase begins to synthesize the RNA transcript.

Comments and references

Added relationship is_a SO:0002309 core_promoter_element with the creation of core_promoter_element as part of GREEKC initiative August 2020 - Dave Sant.

Definition references: SO:ke

Synonyms

ScopeValue
exactINSDC_note:transcription_start_site
exacttranscription start site
exacttranscription_start_site
broadINSDC_feature:misc_feature

Identifiers and subsets

Accession: SO:0000315

Persistent URL: http://purl.obolibrary.org/obo/SO_0000315

Alternate IDs: None

Subsets: SOFA

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2020-08-13 in commit 56fcc6a

Number of changes: 4

Ontology neighborhood diagram

Ontology neighborhood for SO:0000315 Ontology neighborhood graph for SO:0000315 TSS. Parent, child, and related nodes can be activated to open their term pages. SO:0002309 core_promoter_element SO:0002309 core_promoter_element SO:0000835 primary_transcript_region SO:0000835 primary_transcript_region SO:0000315 TSS SO:0000315 TSS SO:0001238 major_TSS SO:0001238 major_TSS SO:0001239 minor_TSS SO:0001239 minor_TSS
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2020-08-13parent addedParent added: SO:000230956fcc6a
2018-01-26synonym addedSynonym added: INSDC_note:transcription_start_site
Scope: exact
5fe48bd
2018-01-26synonym addedSynonym added: INSDC_feature:misc_feature
Scope: broad
5fe48bd
2016-12-05createdTerm introduced into the editable ontology history
Initial label: TSS
Initial definition captured.
Initial parent: SO:0000835
92e3cae