Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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processed_pseudogene

SO:0000043

Definition: A pseudogene created via retrotranposition of the mRNA of a functional protein-coding parent gene followed by accumulation of deleterious mutations lacking introns and promoters, often including a polyA tail.

Comments and references

Please not the synonym R psi M uses the spelled out form of the greek letter.

Definition references: GENCODE:http://www.gencodegenes.org/gencode_biotypes.html

Synonyms

ScopeValue
exactINSDC_qualifier:processed
exactprocessed pseudogene
exactretropseudogene
relatedR psi G
relatedpseudogene by reverse transcription
broadINSDC_feature:gene

Identifiers and subsets

Accession: SO:0000043

Persistent URL: http://purl.obolibrary.org/obo/SO_0000043

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2018-01-26 in commit 5fe48bd

Number of changes: 3

Ontology neighborhood diagram

Ontology neighborhood for SO:0000043 Ontology neighborhood graph for SO:0000043 processed_pseudogene. Parent, child, and related nodes can be activated to open their term pages. SO:0000336 pseudogene SO:0000336 pseudogene SO:0000043 processed_pseudogene SO:0000043 processed_pseudogene SO:0002109 transcribed_processed_pseudogene SO:0002109 transcribed_processed_pseudogene SO:0002105 translated_processed_pseudogene SO:0002105 translated_processed_pseudogene
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2018-01-26synonym addedSynonym added: INSDC_qualifier:processed
Scope: exact
5fe48bd
2018-01-26synonym addedSynonym added: INSDC_feature:gene
Scope: broad
5fe48bd
2016-12-05createdTerm introduced into the editable ontology history
Initial label: processed_pseudogene
Initial definition captured.
Initial parent: SO:0000336
92e3cae